NRNB project

This page contains the details of a technical writing project accepted for Season of Docs.

Project summary

Open source organization:
National Resource for Network Biology (NRNB)
Technical writer:
kozo2
Project name:
Replacing GUI control tutorials to Jupyter Notebook and R Markdown
Project length:
Standard length (3 months)

Project description

The tutorials at https://github.com/cytoscape/cytoscape-tutorials/wiki are great but most of them are GUI based and not automated in Python or R.

I will write the contents of Cytoscape tutorials in both Python and R as much as possible, and make the Jupyter Notebook and R Markdown gallery site. The design of those sites will look like https://plot.ly/ipython-notebooks/ and https://rmarkdown.rstudio.com/gallery.html.

To maintain consistency of the new content, I will use CI services and https://github.com/cytoscape/docker-cytoscape-desktop (i.e. automate running the Jupyter Notebook and R Markdown).